All nature & natural history museums and attractions to visit in Japan

Japan has a lot to offer for people that like animals, plants and anything else related to nature and its history. Below we list all 115 nature and natural history museums that are located in Japan.

Is nature and the natural world something that interests you and are you looking for the best nature museums to visit in Japan? These are the ones:

  1. Osaka Aquarium Kaiyukan1

    Osaka Aquarium Kaiyukan

     Osaka Prefecture
    The Osaka Aquarium Kaiyukan is a large public aquarium located in Osaka, Japan. It is not just one aquarium but a series of aquariums built around one massive water tank. This unique design allows visitors to experience a variety of marine life in different environments, all within the same facility.
  2. Arashiyama Monkey Park Iwatayama2

    Arashiyama Monkey Park Iwatayama

     Kyoto
    Iwatayama Monkey Park is a commercial park situated in Arashiyama, Kyoto, Japan. The park is located on Mount Arashiyama, providing visitors with a unique opportunity to interact with nature and wildlife in a serene setting. The park's location offers a panoramic view of the city, making it a popular destination for tourists.
  3. Ueno Zoo3

    Ueno Zoo

     Tokyo
    The Ueno Zoo, located in Taitō, Tokyo, Japan, is a 14.3-hectare zoo managed by the Tokyo Metropolitan Government. As Japan's oldest zoo, it has a rich history dating back to its opening on March 20, 1882.
  4. Tokyo Sea Life Park4

    Tokyo Sea Life Park

     Edogawa
  5. National Museum of Nature and Science5

    National Museum of Nature and Science

     Taito
  6. Okinawa Churaumi Aquarium6

    Okinawa Churaumi Aquarium

     Motobu
  7. Nagai Botanical Garden7

    Nagai Botanical Garden

     Osaka Prefecture
    The Nagai Botanical Garden is a spacious 8-hectare botanical garden nestled in the southeast corner of Nagai Park in Osaka, Japan. This location offers a serene and natural environment for visitors to explore and enjoy. The garden is easily accessible and provides a tranquil escape from the bustling city life.
  8. Manyo Botanical Garden8

    Manyo Botanical Garden

     Nara
  9. Ashikaga Flower Park9

    Ashikaga Flower Park

     Ashikaga
    One of the most beautiful botanical gardens in Japan, Ashikaga Flower Park is known for its great Japanese Wisteria flower, a vine which blooms in light purple and pink. It is huge - covers almost an acre of the park! As of April 2018, you can get to this botanical garden by train as a train statio
  10. Marine World Uminonakamichi10

    Marine World Uminonakamichi

     Fukuoka Prefecture
    Opened in 1989, this marine world features 70 aquariums full of marine animals and plants. Be sure to check the schedule and see one of its famous shows, such as Dolphin and Sea Lion show and Sea Otter feedings.
  11. Maruyama zoo11

    Maruyama zoo

     Sapporo
    The Sapporo-Maruyama Zoo is situated in Chūō-ku, a district of Sapporo, which is the capital city of the Japanese prefecture Hokkaidō. This location makes it easily accessible for tourists visiting the city or the region.
  12. Sunshine Aquarium12

    Sunshine Aquarium

     Toshima
  13. Tennoji Zoo13

    Tennoji Zoo

     Osaka Prefecture
    The Tennoji Zoo, located in the Tennoji district of Osaka, Japan, holds a significant place in history as it is the third oldest zoo in the country. It was officially opened to the public on January 1, 1915. This historical significance adds to the charm and appeal of the zoo, making it a notable destination for tourists visiting Osaka.
  14. New Yashima Aquarium14

    New Yashima Aquarium

     Takamatsu
  15. Asahiyama Zoo15

    Asahiyama Zoo

     Asahikawa
  16. Higashiyama Zoo and Botanical Gardens16

    Higashiyama Zoo and Botanical Gardens

     Nagoya
    The Higashiyama Zoo and Botanical Gardens is a unique combination of a botanical garden, a zoo, and an amusement park. It is located in Chikusa-ku, a district of Nagoya, the capital of central Japan's Aichi. This makes it a versatile destination for tourists, offering a variety of experiences in one location.
  17. Port of Nagoya Public Aquarium17

    Port of Nagoya Public Aquarium

     Nagoya
    The Port of Nagoya Public Aquarium, located in Minato-ku, Nagoya, Aichi Prefecture, is recognized for its impressive size. It boasts the largest tank capacity and total area among all public aquariums in Japan, making it a significant destination for those interested in marine life.
  18. Tsunami and Storm Surge Disaster Prevention Station18

    Tsunami and Storm Surge Disaster Prevention Station

     Osaka Prefecture
    An educational center and museum which seeks to educate the general public about the natural disasters that have occurred in Osaka. It also teaches its visitors how to behave when an earthquake or tsunami might hit the city in the future.
  19. Miyajima Public Aquarium19

    Miyajima Public Aquarium

     Hatsukaichi
    The Miyajima Public Aquarium is situated on the scenic island of Itsukushima, in the city of Hatsukaichi, Hiroshima, Japan. This location offers visitors a unique opportunity to explore the rich marine life while enjoying the beautiful surroundings of the island.
  20. Fukuoka Municipal Zoo and Botanical Garden20

    Fukuoka Municipal Zoo and Botanical Garden

     Fukuoka Prefecture
  21. Hakone Botanical Garden of Wetlands21

    Hakone Botanical Garden of Wetlands

     Hakone
  22. Tama Zoological Park22

    Tama Zoological Park

     Hino
  23. Hiroshima City Asa Zoological Park23

    Hiroshima City Asa Zoological Park

     Hiroshima
  24. Kobe Oji Zoo24

    Kobe Oji Zoo

     Kobe
  25. Nifrel25

    Nifrel

     Suita
  26. Kyoto Aquarium26

    Kyoto Aquarium

     Kyoto
    The Kyoto Aquarium is situated in the scenic Umekoji Park in Kyoto City, specifically in the Shimogyo Ward of Kyoto Prefecture, Japan. This location offers visitors the opportunity to enjoy the natural beauty of the park while exploring the diverse marine life housed in the aquarium.
  27. Nagasaki Bio Park27

    Nagasaki Bio Park

     Saikai
    A lovely botanical park and zoo in one, opened in 2004. There are nearly 2000 animals, including capybaras in a bath and guinea pigs traipsing across a miniroad.
  28. Aqua World Oarai28

    Aqua World Oarai

     Oarai
    Aqua World Oarai, previously known as Oarai Aquarium, is a significant marine attraction located in Oarai, Ibaraki, Japan. The aquarium is situated facing the Pacific Ocean, providing a unique and scenic location for visitors. It's one of the largest aquariums in Japan, offering a wide variety of marine life for tourists to explore.
  29. Sunpiazza Aquarium29

    Sunpiazza Aquarium

     Sapporo
    Take your children to an aquarium and a near playground and have a nice family afternoon with a lot of fun.
  30. Sendai Umino-Mori Aquarium30

    Sendai Umino-Mori Aquarium

     Sendai
  31. Kiseki No Hoshi Greenhouse31

    Kiseki No Hoshi Greenhouse

     Awaji
    The Kiseki No Hoshi Greenhouse, also referred to as the Museum of Miraculous Planet Plants, is a significant botanical complex in Japan. It spans an impressive area of 6,700 m², making it the second largest botanical greenhouse area in the country. This expansive space is home to a diverse range of plant species, offering visitors a unique opportunity to explore and learn about the world of botany.
  32. Himeji City Aquarium32

    Himeji City Aquarium

     Himeji
  33. Himeji City Zoo33

    Himeji City Zoo

     Himeji
  34. Kyoto University Shirahama Aquarium34

    Kyoto University Shirahama Aquarium

     Shirahama
  35. Hinotonton Zoo (Hamura Zoological Park)35

    Hinotonton Zoo (Hamura Zoological Park)

     Hamura
  36. Hamamatsu Zoological Gardens36

    Hamamatsu Zoological Gardens

     Hamamatsu
  37. Adventure World37

    Adventure World

     Shirahama
    Adventure World in Shirahama is a sprawling amusement park situated on the Kii Peninsula, one of the largest peninsulas of the main Japanese island of Honshū. This 80-hectare park is a combination of a zoo, a safari park, a show aquarium, and an amusement park filled with numerous attractions. It is a member of the Japanese Association of Zoos and Aquariums (JAZA).
  38. Yokohama Zoological Gardens38

    Yokohama Zoological Gardens

     Yokohama
  39. Hirakawa Zoo39

    Hirakawa Zoo

     Kagoshima Prefecture
  40. 40

    Kujukushima Aquarium Umi Kirara

     Sasebo
  41. Kurume Bird Center41

    Kurume Bird Center

     Kurume
  42. Nagasaki Penguin Aquarium42

    Nagasaki Penguin Aquarium

     Nagasaki
    A lovely aquarium, that provides home to some 180 penguins of 9 different species - both cold-water and temperate.
  43. Taiji Whale Museum43

    Taiji Whale Museum

     Taiji
    This complex houses a museum and an aquarium. Be sure to check their dolphin and whale shows. You can also go and swim with a dolphin - book in advance.
  44. Otaru Aquarium44

    Otaru Aquarium

     Otaru
  45. Hyogo Prefectural Flower Center45

    Hyogo Prefectural Flower Center

     Kasai
  46. Inokashira Park Zoo46

    Inokashira Park Zoo

     Musashino
    Inokashira Park Zoo is a city zoo nestled in the city of Musashino, Tokyo. It also has a branch located in Mitaka. The zoo is conveniently situated near the Ghibli Museum, making it an ideal location for tourists who are interested in exploring both attractions during their visit.
  47. 47

    Fukuyama City Zoo

     Fukuyama
  48. Chiba Zoological Park48

    Chiba Zoological Park

     Chiba Prefecture
  49. Numazu Port Deep Sea Aquarium49

    Numazu Port Deep Sea Aquarium

     Numazu
  50. Chausuyama Zoo50

    Chausuyama Zoo

     Nagano
  51. Izu Cactus Park - Izu Shaboten Zoo51

    Izu Cactus Park - Izu Shaboten Zoo

     Ito
  52. Salmon Hometown Chitose Aquarium52

    Salmon Hometown Chitose Aquarium

     Chitose
  53. Wakayama Prefectural Museum of Natural History53

    Wakayama Prefectural Museum of Natural History

     Kainan
    This natural history museum houses not only a vast exhibition of fossils but also a large aquarium with local marine animals.
  54. Kobe Animal Kingdom54

    Kobe Animal Kingdom

     Kobe
  55. Aquamarine Fukushima55

    Aquamarine Fukushima

     Iwaki
  56. Kamine Zoo56

    Kamine Zoo

     Hitachi
  57. Ishikawa Zoo57

    Ishikawa Zoo

     Nomi
  58. Tohoku Safari Park58

    Tohoku Safari Park

     Nihonmatsu
  59. Obihiro Zoo59

    Obihiro Zoo

     Obihiro
  60. Atagawa Tropical & Alligator Garden60

    Atagawa Tropical & Alligator Garden

     Higashiizu
  61. Izu Animal Kingdom61

    Izu Animal Kingdom

     Higashiizu
  62. Edogawa Natural Zoo62

    Edogawa Natural Zoo

     Edogawa
  63. Sumida Aquarium63

    Sumida Aquarium

     Tokyo
    The Sumida Aquarium is a public aquarium situated on the 5th and 6th floors of the Tokyo Skytree in Sumida, Tokyo. The aquarium, which opened in 2012, coincided with the opening of the Tokyo Skytree itself. This location offers visitors the unique experience of exploring marine life while being in one of Tokyo's most iconic landmarks.
  64. Takasakiyama Natural Zoological Garden64

    Takasakiyama Natural Zoological Garden

     Oita Prefecture
  65. Yokohama City Kanazawa Zoo65

    Yokohama City Kanazawa Zoo

     Yokohama
  66. Yamanashi Prefectural Fuji-yuusui-no-sato & Mori-no-naka Aquarium66

    Yamanashi Prefectural Fuji-yuusui-no-sato & Mori-no-naka Aquarium

     Oshino
  67. Kinka Squirrel Village67

    Kinka Squirrel Village

     Gifu
  68. Takaoka Castle Park Zoo68

    Takaoka Castle Park Zoo

     Takaoka
  69. Gunma Insect World69

    Gunma Insect World

     Kiryu
  70. Ocean Expo Park Tropical & Subtropical Arboretum70

    Ocean Expo Park Tropical & Subtropical Arboretum

     Motobu
  71. Nishiyama Zoo71

    Nishiyama Zoo

     Sabae
  72. Ichihara Elephant Kingdom72

    Ichihara Elephant Kingdom

     Ichihara SA
  73. Yumemigasaki Zoological Park73

    Yumemigasaki Zoological Park

     Kawasaki
  74. Toyama Family Park74

    Toyama Family Park

     Toyama Prefecture
  75. Nagasaki Bio Park - Zoo & Botanical Garden75

    Nagasaki Bio Park - Zoo & Botanical Garden

     Nagasaki
  76. Machida Squirrel Garden76

    Machida Squirrel Garden

     Machida
  77. Oga Aquarium Gao77

    Oga Aquarium Gao

     Oga
    The Oga Aquarium Gao, also known as the Akita Prefectural Oga Aquarium, is situated along the coast of the Oga Peninsula in Oga, Akita Prefecture, Japan. This location offers visitors a unique opportunity to explore the marine life of the region in a beautiful coastal setting.
  78. Uozu Aquarium78

    Uozu Aquarium

     Uozu
  79. North Safari Sapporo79

    North Safari Sapporo

     Sapporo
  80. Yagiyama Zoological Park80

    Yagiyama Zoological Park

     Sendai
  81. Kaikyokan81

    Kaikyokan

     Shimonoseki
  82. Japan Snake Center82

    Japan Snake Center

     Ota
  83. Saitama Children's Zoo83

    Saitama Children's Zoo

     Saitama
  84. Aloha Garden Tateyama84

    Aloha Garden Tateyama

     Tateyama
    The Nambo Paradise Botanical Garden is a significant attraction in Tateyama, Chiba Prefecture, Japan. Spanning over 6.6 hectares (16.3 acres), this botanical garden offers a vast space for visitors to explore and appreciate the beauty of nature. It is administratively dependent on the Chiba Prefecture government.
  85. Shinagawa Aquarium85

    Shinagawa Aquarium

     Shinagawa
  86. Kamogawa Sea World86

    Kamogawa Sea World

     Kamogawa
  87. Nogeyama Zoological Gardens87

    Nogeyama Zoological Gardens

     Yokohama
    Nogeyama Zoological Gardens is a free zoo that is situated in Nogeyama Park, in the Nishi-ku district of Yokohama, Japan. This location offers visitors the opportunity to explore a variety of wildlife without any admission fee. The zoo's location within a park also provides a serene and natural environment that enhances the overall visitor experience.
  88. Shunkaen Bonsai Museum88

    Shunkaen Bonsai Museum

     Tokyo
    The Shunkaen Bonsai Museum, located in Tokyo, Japan, is a bonsai garden that was established in 2002. The founder of this museum is the bonsai master, Kunio Kobayashi. This museum is a testament to his dedication and passion for the art of bonsai.
  89. View Fukushimagata89

    View Fukushimagata

     Niigata
  90. Kitakyushu Museum of Natural History & Human History90

    Kitakyushu Museum of Natural History & Human History

     Kitakyushu
  91. Toyama Science Museum91

    Toyama Science Museum

     Toyama Prefecture
    In 2007, the Toyama Science Museum underwent a significant renewal and reopened in its current form. This transformation allowed the museum to expand its exhibits and enhance its facilities, providing a more comprehensive and engaging experience for visitors.
  92. 92

    Okinawa Zoo & Museum

     Okinawa Island
  93. 93

    Children's Zoo STEP

     Tokyo
  94. 94

    UMI farm

     Yokohama
  95. 95

    Sayuri World

     Ichihara SA
  96. 96

    Joyama Zoo

     Nagano
  97. 97

    Aqua Museum - Yokohama Hakkeijima Sea Paradise

     Yokohama
  98. 98

    Yanagawa Ariake Sea Aquarium

     Yanagawa
  99. 99

    Nakayoshi Zoo

     Kuriyama
  100. 100

    Tokiwa Zoo

     Ube
  101. 101

    Dolphin Fantasy - Yokohama Hakkeijima Sea Paradise

     Yokohama
  102. 102

    Hiratsuka Park Petting Zoo

     Hiratsuka
  103. 103

    Nakayoshi Square - Nogeyama Zoological Gardens

     Yokohama
  104. 104

    Shinozaki Pony Land

     Edogawa
  105. 105

    Sakurajima Visitor Centre

     Kagoshima Prefecture
  106. Nibetsu Forest Museum106

    Nibetsu Forest Museum

     Akita Prefecture
  107. 107

    Izu Ammonite Museum

     Ito
  108. Hokkaido University Botanical Garden108

    Hokkaido University Botanical Garden

     Sapporo
    The Hokkaido University Botanical Garden is a sizable botanical garden spanning 13.3 hectares. It is conveniently located near the center of Sapporo, Japan, making it easily accessible for tourists visiting the city. The garden offers a vast array of plant species and a serene environment for visitors to enjoy.
  109. Tohoku University Botanical Gardens109

    Tohoku University Botanical Gardens

     Sendai
  110. Dormouse Museum110

    Dormouse Museum

     Hokuto
  111. Nawa Insect Museum111

    Nawa Insect Museum

     Gifu
  112. Toyohashi Museum of Natural History112

    Toyohashi Museum of Natural History

     Toyohashi
  113. 113

    Kyoto Owls Forest Kyoto

     Kyoto
  114. 114

    Naramachi Dung Beetle Museum

     Nara
  115. 115

    Nanto City Botanical Garden Floral Park

     Nanto