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The best museums in Nagasaki in September 2025

These are the top 10 best museums in Nagasaki, Japan, ranked by their rating and popularity in 2025. Click a museum for more information about the museum, including visitor information, exhibitions and reviews.

For a complete overview of museums in Nagasaki, their exhibitions and discount cards & passes, see our overview page with all museums in Nagasaki.

Looking for the best museums in Nagasaki? These are the best ones:

  1. Nagasaki Atomic Bomb Museum1

    Nagasaki Atomic Bomb Museum

     Nagasaki
     4.7
    History & Anthropology History
  3. Noguchi Yataro Memorial Art Museum2

    Noguchi Yataro Memorial Art Museum

     Nagasaki
     4.4
    Art & Design Art
  4. Nagasaki Prefectural Art Museum3

    Nagasaki Prefectural Art Museum

     Nagasaki
    Opened in 2005, this museum mainly features Nagasaki-related artworks, that is artworks that either portray Nagasaki, or were made by Nagasaki-born artists. You can also find one of the largest collections of Spanish art here.
     4.4
    Art & Design Art
  5. Siebold Memorial Museum4

    Siebold Memorial Museum

     Nagasaki
     4.4
    Science & Technology Science
  7. Nagasaki Museum of History and Culture5

    Nagasaki Museum of History and Culture

     Nagasaki
     4.4
    History & Anthropology History
  8. Nagasaki Penguin Aquarium6

    Nagasaki Penguin Aquarium

     Nagasaki
    A lovely aquarium, that provides home to some 180 penguins of 9 different species - both cold-water and temperate.
     4.4
    Nature & Natural History Nature
  9. Inori-no-oka Picture Book Museum7

    Inori-no-oka Picture Book Museum

     Nagasaki
     4.5
  11. Chanpon Museum8

    Chanpon Museum

     Nagasaki
    This museum and restaurant in one is all about a local culinary speciality - the Chanpon (also called Champon) noodle dish, which is a unique type of ramen only made in the Nagasaki area. There is also a shop selling some Nagasaki memorabilia.
     4.3
    Specialized & Alternative Specialized
  12. Gunkanjima Digital Museum9

    Gunkanjima Digital Museum

     Nagasaki
     4.6
    Science & Technology Science
  13. The Former Hong Kong and Shanghai Bank Nagasaki Branch Museum10

    The Former Hong Kong and Shanghai Bank Nagasaki Branch Museum

     Nagasaki
     4.4
    History & Anthropology History

All museums in Nagasaki

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